Below are the 1998 – 1999 men’s college squash final team rankings:
- Trinity College
- Harvard University
- Yale University
- Princeton University
- University of Western Ontario
- Dartmouth College
- Williams College
- Amherst College
- Brown University
- Denison University
- Bowdoin College
- United States Naval Academy
- Franklin & Marshall College
- Hobart College
- Wesleyan University
- University of Pennsylvania
- Cornell University
- Colby College
- Bates College
- Massachusetts Institute of Technology
- Vassar College
- Fordham University
- Hamilton College
- University of Rochester
- Tufts University
- University of California Berkley
- Haverford College
- Colgate University
- Pennsylvania State University
- George Washington University
- Northwestern University
- Saint Lawrence University
- Ohio Wesleyan University
- Stanford University
- Bard College